Publications

Publications (since 1997)
Publications (before 1997)

PUBLICATIONS (refereed only, since 1997)

"A Tegumental localized Ca-ATPase Gene isolated from S. mansoni" (M.H. Tsai, L.F. Tao, K.A. Marx, P. Skelley), Molecular and Biochemical Parasitology, submitted (2000).

"Visualization Directed Data Mining of NCI Anti-Cancer Drug Activities on Cancer Cell Lines," (Hoffman, P., Pinkney, D., Marx, K.A. and Grinstein, G.G.), Knowledge Discovery and Datamining, submitted (2000).

"Comparison of D. discoideum Experimental with Calculated poly(dA).poly(dT) Homopolymer Tract Frequencies from GENBANK," (Assil, I., Bizzaro, J. Blake, R.D. and Marx, K.A.), J. Biomolecular Structure and Dynamics, in preparation.

"Hydrophilic Modification of the Quartz Crystal Microbalance Gold Surface Improves Endothelial Cell Adhesion and Spreading," (T. Zhou, K.A. Marx, M. Warren, H. Schulze and S.J. Braunhut), Biotechnology Progress, submitted (2000).

"Amperometric Hydrogen Peroxide Sensor Electrodes Coated with Electropolymerized Tyrosine Derivative and Phenolic Films," (D.D. Long, K.A. Marx and Tiean Zhou), J. Electroanalytical Chemistry, in press (2000).

"A Piezoelectric Cellular Biosensor Based on the Quartz Crystal Microbalance with Surface Attached Endothelial Cells," (K. A. Marx, T. Zhou, H. Schulze and S. J. Braunhut), Biosensors and Bioelectronics, in press (2000).                    

[This paper was solicited for the journal as The EDITOR'S SELECTION for the BIOSENSORS 2000 Meeting of the Sixth World Congress of Biosensors, May 2000 in San Diego.]

"Self-Assembled Micron Scale Tubule Structures Formed by Amphiphilic Alkyl Tyrosine Derivatives Prior to and Following Enzymatic Polymerization," (K.A. Marx, K.S. Alva and R. Sarma), Materials Science and Engineering, C 11, 155-163 (2000).

"The Quartz Crystal Microbalance as a Continuous Monitoring Tool for the Study of Endothelial Cell Attachment and Growth," (T. Zhou, K.A. Marx, M. Warren, H. Schulze and S.J. Braunhut), Biotechnology Progress, 16, 268-277 (2000).

"Experimental Melting Behavior of the Three Major Schistosoma Species," (K.A. Marx, J.W. Bizzaro, R.D. Blake, M.H. Tsai and L.F. Tao), Molecular and Biochemical Parasitology, 107, 303-307 (2000).

"Randomly Amplified Polymorphic DNA (RAPD) PCR Assay for Identification of Schistosoma mansoni Strains Sensitive or Tolerant to Anti-Schistosomal Drugs," (M.H. Tsai,  K.A. Marx, M.M. Ismail and L.F. Tao), J. Parasitology, 86, 146-149 (2000).

"The Iso-Competition Point for Counterion Competition Binding to DNA: Calculated Multivalent vs. Monovalent Cation Binding Equivalence," (A.Z. Li and K.A. Marx), The Biophysical J., 77, 114-122 (1999).

[The Biophysical J. editors selected this article as an especially noteworthy advance for a special NEWS and VIEWS feature article in the same journal issue].

"Statistical Mechanical Simulation of Polymeric DNA Melting With MELTSIM", (R.D. Blake, J. W. Bizzaro, J.D. Blake, G.R. Day, S.G. Delcourt, J. Knowles, K.A. Marx, J. SantaLucia, Jr.), BioInformatics,  15, 370-375 (1999).

"Cellular Adhesion and Spreading of Endothelial Cells Monitored in Real Time Using the Quartz Crystal Microbalance," (T. Zhou, S.J. Braunhut, D. Medeiros and K.A. Marx), Proceedings MRS: "Biomedical Materials-Drug Delivery, Implants and Tissue Engineering", Materials Research Society, Pittsburgh, PA., 550, 177-182 (1999).

"Quartz Crystal Microbalance Measurement of Self-Assembled Micellar Tubules of the Amphiphilic Decyl Ester of d-Tyrosine and Their Enzymatic Polymerization," (K.A. Marx, T. Zhou and R. Sarma), Biotechnology Progress, 15, 522-528 (1999).

"Comparison of Experimental to MELTSIM Calculated DNA Melting of the (A+T) Rich Dictyostelium Discoideum Genome: Denaturation Maps Distinguish Exons from Introns", (K.A. Marx, I. Q. Assil, J.W. Bizzaro and R.D. Blake), J. Biomolecular Structure and Dynamics, 16, 329-340 (1998).

"Comparison of Experimental with Theoretical Melting of the Yeast Genome and Individual Yeast Chromosome Denaturation Mapping Using the Program MELTSIM", ( J.W. Bizzaro, K.A. Marx and R.D. Blake), Proceedings MRS: "Materials Science of the Cell", Materials Research Society, Pittsburgh, PA., 489, 73-78 (1998).

"DNA Bound to Polypyrrole Films: High Resolution Imaging, DNA Binding Kinetics and Internal Migration", (R. Pande, G.C. Ruben, J.O. Lim, S. Tripathy and K.A. Marx), Biomaterials, 19, 1657-1667 (1998).

"Potential Dependent Endothelial Cell Adhesion, Growth and Cytoskeletal Rearrangements", (T. Zhou, S.J. Braunhut, D. Medeiros and K.A. Marx), Proceedings MRS: "Materials Science of the Cell", Materials Research Society, Pittsburgh, PA., 489, 211-216 (1998).

"A Gel Electrophoresis Study of the Competitive Effects of Monovalent Counterion on the Extent of Divalent Counterions Binding to DNA", (A. Li, H. Huang, X. Re, L.J. Qi and K.A. Marx) The Biophysical Journal , 74, 964-973 (1998).

"DNA Visual and Analytic Data Mining," (P. Hoffman, G. Grinstein,  K.A. Marx, I. Grosse and E. Stanley) Proceedings, IEEE Visualization 97, 437-441 (1997).

"Extracellular Cysteines of the Corticotropin-Releasing Factor (CRF) Receptor are Critical for Ligand Binding," (L.J. Qi, A.T. Leung, Y. Xiong, K.A. Marx, A. Samra), Biochemistry, 36, 12442-12448 (1997).

"Biochemically Designed Polymers as Self Organized Materials," (K. S. Alva, R. Sarma, K.A. Marx, J. Kumar and S. K. Tripathy) Proceedings, SPIE, San Diego, CA., 3040, 200-210 (1997).

"Comparison of Experimental and Theoretical Melting Behavior of DNA," (K.A. Marx, J.W. Bizzaro and R.D. Blake), Proceedings MRS :Statistical Mechanics in Physics and Biology: , Materials Research Society, Pittsburgh, PA., 463, 147-152 (1997).

"DNA End-to-End Distance Change due to Divalent Counterion Condensation Studied by Pulse Gel Electrophoresis," (A. Li, H. Huang and K.A. Marx), Proceedings MRS: Statistical Mechanics in Physics and Biology., Materials Research Society, Pittsburgh, PA., 463, 67-72 (1997).

"Trinitrotoluene and Metabolites Binding to Humic Acid," (A. Li, K.A. Marx, J. Walker and D.L. Kaplan), Environmental Science & Technology, 31, 584-589 (1997).

"Enzymatic Synthesis and Characterization of a Novel Water Soluble Polyaniline: Poly(2,5 diamino benzene sulfonic acid)," (K. Shridhara Alva, J. Kumar, K.A. Marx and S.K. Tripathy), Macromolecules, 30, 4024-4029 (1997).

"Two-Photon Induced Fluorescence from the Phycoerythrin Protein," (Z. Chen, D.L. Kaplan, K. Yang, J. Kumar, K.A. Marx and S.K. Tripathy), Applied Optics,  36, 1-7 (1997).

"Mechanistic Study of Enzyme Catalyzed Polymerization of 8-Hydroxyquinoline-5- Sulfonate Using Nuclear Magnetic Resonance Spectroscopy," (K.S. Alva, K.A. Marx, J. Kumar and S.K. Tripathy), Macromolecular Rapid Communications, 18, 133-137 (1997).

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PUBLICATIONS - (before 1997)

"Phycobiliproteins Encapsulated in Sol-Gel Glasses," (Z. Chen, D.L. Kaplan, K. Yang, J. Kumar, K.A. Marx,  S. Tripathy) In: Biochemical Aspects of Sol-Gel Science and Technology, (S. Braun and D. Avnir, eds.) J. Sol-Gel Science and Tech., 7, 99-108 (1996).

"GENVIS: A Sequence Visualization Technique for Genomic DNA," (A. Mamania, G. Grinstein and K. A. Marx), Proceedings of SPIE 96 Symposium: Visual Data Exploration and Analysis, San Jose, 2656, 189-199 (1996).

"Trivalent Counterion Condensation on DNA Measured by Pulse Gel Electrophoresis," (A. Li, K.A. Marx, L. Qi and H. Zhang), Biopolymers, 38, 367-376 (1996).

"Molecular Assembly of Multilayer Enzyme on Fibre Optic Surface: Towards the Development of Chemileuminescence Based Fibre Optic Biosensors," (Z. Chen, H. Gao, J. Kumar, K.A. Marx, S.K. Tripathy and D.L. Kaplan) SPIE BIOS'96, in press (1996).

"New Strategies for the Fabrication of Enzyme Electrodes," (K.S. Alva, L.A. Samuelson, J. Kumar, K.A. Marx, D.L. Kaplan and S.K. Tripathy), Proceedings MRS : Thin Films and Surfaces for Bioactivity and Biomedical Applications, Materials Research Society, Pittsburgh, PA. 414, 119-124 (1996).

"Multilayer Enzyme Assembly for the Development of a Novel Fiber Optic Biosensor," ( H. Gao, Z. Chen, J. Kumar, K.A. Marx, S.K. Tripathy and D.L. Kaplan), Proceedings MRS: Thin Films and Surfaces for Bioactivity and Biomedical Applications, Materials Research Society, Pittsburgh, PA. 414, 125-132 (1996).

"Signal Transduction Composites: Biomaterials with Electroactive Polymers," (L.A. Samuelson, R. Pande, M.S. Ayyagari, S. Kamtekar, K.G. Chittibabu, H. Gao, K.A. Marx, J. Kumar, S.K. Tripathy and D.L. Kaplan), Polymeric Materials Encyclopedia: Synthesis, Properties and Applications (J.C. Salamone, ed.) Polymer Science and Technology Series, 10, QS 7612-7620 (1996).

"Molecular Assembly of Multilayer Enzyme: Toward The Development of a Chemileuminescence Based Fiber Optic Biosensor," (Z. Chen, D.L. Kaplan, H. Gao, J. Kumar, K.A. Marx and S.K. Tripathy) Materials Science & Engineering C, in press (1996).

"Enzymatic Synthesis of Poly(diaminoazobenzene): Spectral Characterization," (K. Shridhara Alva, J. Kumar, K.A. Marx, D.L. Kaplan and S.K. Tripathy), Makromolecular Chemistry Rapid Commun., submitted (1996).

"Biochemical Synthesis Of Water Soluble Polyanilines: Poly(p-Amino Benzoic Acid)",(K. Alva, K. A. Marx, J. Kumar and S. K. Tripathy), Macromolecular Rapid Communications. 17, 859-863 (1996).

"Phycobiliproteins Encapsulated in Sol-Gel Glass," (Z. Chen, D.L. Kaplan, K. Yang, J. Kumar, K.A. Marx and S.K. Tripathy), J.Sol Gel Science and Technology,  7, 99-108 (1996).

"Bacteriorhodopsin Encapsulated in Conducting Polymer: A Biomaterial for Signal Transduction," (Z. Chen, Chittibabu, K.G., Li, L., Marx, K.A., Kumar, J., Tripathy, S.K. and Kaplan, D.L.), Advanced Materials, submitted (1996).

"Photoelectrochemical Response of Benzoporphyrins in Solution and Solid Films," ( Alva, K.S., K.A. Marx, Kumar, J., Tripathy, S.K., Samuelson, L.A., Akkara, J and Kaplan, D.L.), J. Phys. Chem., submitted.

"Photochemistry of Langmuir-Blodgett Films of Benzoporphyrins without long Alkyl Chains," (Alva, K.S., K.A. Marx, Kumar, J., Tripathy, S.K., Samuelson, L.A., Akkara, J. A. and Kaplan, D.L.), submitted.

"Dependence of DNA Binding on Polypyrrole Film Characteristics," ( D. Minehan, K.A. Marx and S.K. Tripathy), submitted to Thin Solid Films.

"Synthesis and Characterization of Polyphenols From Peroxidase Catalyzed Reactions," (J.A. Akkara, F. Bruno, L.A. Samuelson, P. Salapu, D.L. Kaplan, B.K. Mandal, K.A. Marx and S. Tripathy), J. Enzymatic and Microbial Technology , in press (1995).

"Enzymatic Polymerization of Amphiphilic Alkyl Tyrosine Derivatives From Emulsions," (R. Sarma, K.S. Alva, K.A. Marx, S.K. Tripathy, J.A. Akkara, and D.L. Kaplan), Materials Science and Engineering, C 4, 189-192 (1996).

"Novel Immobilization Techniques in the Fabrication of Efficient Electrochemical Biosensors," (K.S. Alva, K.A. Marx, L.A. Samuelson, J. Kumar, S.K. Tripathy and D.L. Kaplan), Smart Structures and Materials  (A. Crowson, Ed.) SPIE, 2716, 152-163 (1996).

"A Biotinylated Undecylthiophene Copolymer for Hydrophobic Surface Immobilization: Attaching Alkaline Phosphatase for Chemileuminescence Based Organophosphorus Pesticide Biosensing," ( R. Pande, S. Kamtekar, M.S. Ayyagari, M. Kamath, K.A. Marx, J. Kumar, S. K. Tripathy and D.L. Kaplan), Bioconjugate Chemistry, 7, 159-164 (1996).

"Trace Analysis of Zn(II), Be(II) and Bi(III) by Enzyme-catalyzed Chemileuminescence," (S.D. Samtekar, R. Pande, M.S. Ayyagari, K.A. Marx, D.L. Kaplan, J. Kumar and S. Tripathy), Analytical Chemistry, 68, 216-220 (1996).

"Integrating Biotinylated Polyalkylthiophene Thin Films with Biological Macromolecules: Biosensing Organophosphate Pesticides and Metal Ions with Surface Immobilized Alkaline Phosphatase Utilizing Chemileuminescence Measurements," (R. Pande, S. Kamtekar, M.S. Ayyagari, K.A. Marx, J. Kumar, D.L. Kaplan and S.K. Tripathy) Smart Materials and Structures (A. Peter Jardine, Ed.) SPIE 2441, 12-22 (1995).

"Advanced Materials From Enzymatic Polymerization of Substituted Phenols in Ordered Templates," (M.S. Ayyagari, F.F. Bruno, S.K. Tripathy, K.A. Marx, D.L. Kaplan, J.A. Akkara and D. Rao), Polymers and Advanced Materials: Emerging Technologies and Business Opportunities (P.N. Prasad, J.E. Mark and T.J. Fai., Eds.) Plenum Publishing Co., New York, 667-675 (1995).

"Enzyme Mediated Two Dimensional Polymerization of Aromatic Derivatives on a Langmuir Trough," (F.F. Bruno, J.A. Akkara, D.L. Kaplan, P. Sekher, K.A. Marx and S.K. Tripathy),  Industrial and Engineering Chemistry,  34, 4009-4015 (1995).

"Controlled Free Radical Polymerization of Phenol Derivatives by Enzyme-Catalyzed Reactions in Organic Solvents," (M.S. Ayyagari, J.A. Akkara , K.A. Marx, S.K. Tripathy and D.L. Kaplan), Macromolecules, 28, 5192-5197 (1995).

"Sol-Gel Encapsulated Light-Transducing Protein Phycoerythrin: A New Biomaterial," ( Chen, Z., Samuelson, L.A., Akkara, J., Kaplan, D.A., Gao, H., Kumar, J., Marx, K.A. and Tripathy, S.K.), Chemistry of Materials, 7, 1779-1783 (1995).

"Chemileuminescence-based Inhibition Kinetics of Alkaline Phosphatase for Organophosphorus Pesticide Detection," (M.S. Ayyagari, S. Kamtekar, R. Pande,  K.A. Marx, D.L. Kaplan, S.K. Tripathy and J. Kumar), Biotechnology Progress,  11, 699-708 (1995).

"Synthesis and Characterization of Polyphenols and Polyanilines from Peroxidase- Mediated Reactions on a Langmuir Trough," (F.F. Bruno, J.A. Akkara, L.A. Samuelson, D.L. Kaplan, B.K. Mandal, K.A. Marx and S.K. Tripathy), Intelligent Materials and Systems, Adv. in Science and Technology  10, (Vincenzini, ed.) Techna, Faenza, Italy, 99-106 (1995).

"A Chemileuminescence-Based Biosensor For Metal Ion Detection." (S. D. Kamtekar, R. Pande, M.S. Ayyagari, K.A. Marx, D.L. Kaplan, J. Kumar and S.K. Tripathy), Materials Science and Engineering:  C 3, 79-83 (1995).

"Biosensors for Pesticide Detection Based on Alkaline Phosphatase-Catalyzed Chemileuminescence," (M.S. Ayyagari, S. Kamtekar, R. Pande, K.A. Marx, J. Kumar,, S.K. Tripathy and D.L.Kaplan), Materials Science and Engineering, C 2, 191-196 (1995).

"Characteristics of poly(p-substituted phenols) Synthesized in Organic Solvents and Microemulsions," ( M. Ayyagari, K.A. Marx, S.K. Tripathy, J.A. Akkara and D.L. Kaplan), Macromolecules, 28, 5192-5197 (1995).

"Uptake and Intracellular Distribution of Oligonucleotide Phosphorothioate by Schistosoma mansoni," (L.F. Tao, K.A. Marx, W. Wongwit, S. Agrawal and R. Coleman), Antisense Research and Development,  5, 123-129 (1995).

"Molecular Assembly of Proteins and Conjugated Polymers: Toward Development of Biosensors," (M.S. Ayyagari, R. Pande, S. Samtekar, H.H. Gao, K.A. Marx, J. Kumar and S.k. Tripathy, J.A. Akkara and D.L. Kaplan), Biotechnology and Bioengineering, 45, 116-121 (1995).

"Enzymatic Mediated Synthesis of Conjugated Polymers at the Langmuir Trough Air-Water Interface,"  (F.F. Bruno, J.A. Akkara, L.A. Samuelson,, D.L. Kaplan, B.K. Mandal, K.A. Marx, J. Kumar and S.K. Tripathy), Langmuir,  11, 889-892 (1995).

"Biomimetic Membrane and Interface Templates for Enzyme-Based Polymerization Reactions," (J.A. Akkara, M. Ayyagari, F.F. Bruno, L. Samuelson, V. T. John, C. Karayigitoglu, S. Tripathy, K.A. Marx, D.V.G.L.N. Roa and D.L. Kaplan), Biomimetics, 2, 331-339 (1994).

"Intelligent Materials Properties of DNA and Strategies for It's Incorporation into Electroactive Polymeric Thin Film Systems," (K.A. Marx, J.O. Lim, D. Minehan, R. Pande, M. Kamath, S. Tripathy and D. Kaplan), Journal of Intelligent Materials Systems and Structures, 5, 447-454 (1994).

"Intelligent Systems Based on Ordered Arrays of Biological Molecules Using the LB Technique," (L.A. Samuelson, B. Wiley, D.L. Kaplan, S.Sengupta, M. Kamath, J.O. Lim, M. Cazeca, J. Kumar, K.A. Marx and S.K. Tripathy) Journal of Intelligent Materials Systems and Structures, 5, 305-310 (1994).

"Alignment of (dA).(dT) Homopolymer Tracts in Gene Flanking Sequences Suggests Nucleosomal Periodicity in D. discoideum DNA," (K.A. Marx, S. Hess and R.D. Blake), Journal of Biomolecular Structure and Dynamics , 12, 235-246 (1994).

"Enzyme Catalyzed Polymerization of Phenol and Aniline Derivatives on a Langmuir Trough to Form Ordered 2-D Polymer Films," (F.F. Bruno, K.A. Marx, S.K. Tripathy, J.A. Akkara, L.A. Samuelson and D.L. Kaplan), J. Intelligent Material Systems and Structures, 5, 631-634 (1994).

"Chemileuminescence-Based Pesticide Biosensor Utilizing the Intelligent Evolved Properties of the Enzyme Alkaline Phosphatase," (M. Ayyagari, S. Samtekar, R. Pande, K.A. Marx, J. Kumar, S. Tripathy and D.L. Kaplan), Proc. 2nd Int. Conf. Intell. Matls., (C. Rogers, Ed.), Technomic Press, 85-96 (1994).

"Photodynamic Protein Incorporated In Conducting Polymer and Sol-Gel Matrices: Toward Smart Materials for Information Storage and Processing," (Z. Chen, K.G. Chittibabu, K.A. Marx, J. Kumar, S.K. Tripathy, L.A. Samuelson, J. Akkara and D.L. Kaplan), in Smart Materials and Structures, (V.K. Varadan, Ed.), Proc. SPIE, 2189, 105-115 (1994).

"Biotinylated Polyalkylthiophene Thin Films and Monolayers that Specifically Incorporate Phycobiliproteins: Toward Smart Materials," (M.S. Ayyagari, R.Pande, J.O. Lim, M.Kamath, N. Beladekere, H.H. Gao, K.A. Marx, S. K. Tripathy and J. Kumar), in Smart Materials and Structures, (V.K. Varadan, Ed.), Proc. SPIE,  2189, 116-125 (1994).

"Interfacing Conducting Polymers and Biological Macromolecules: A Case Study of Insecticide Biosensor Development," K.A. Marx, M. Ayyagari, S. Kamtekar, R. Pande, J.O. Lim, L. Samuelson,, J. Akkara, D. Kaplan), in Biomolecular Materials by Design, (M. Alper, H. Bayley, D. Kaplan, M. Navia, eds.), Proc. MRS, 330, 309-320 (1994).

"A Long Spacer Group Biotinylated Thiophene Copolymer-A Novel Biomaterial For LB Film Assembly," ( M. Kamath, K. Chittibabu, J.O. Lim, K.A. Marx, J. Kumar, S. Tripathy, L.A. Samuelson and D. Kaplan), in Biomolecular Materials by Design, (M. Alper, H. Bayley, D. Kaplan, M. Navia, eds.), Proc. MRS, 330, 185-191 (1994).

"Second Harmonic Generation of Bacteriorhodopsin and Its Application for Three-Dimensional Optical Memory," (Z. Chen, A. Lewis, J. Kumar, S. Tripathy, K. Marx, J., Akkara and D. Kaplan), in Biomolecular Materials by Design, (M. Alper, H. Bayley, D. Kaplan, M. Navia, eds.), Proc. MRS., 330, 263-268 (1994).

"Intelligent Biomaterials Based on LB Monolayer Films Using Biotinylated Lipid-Streptavidin Recognition Incorporating Photodynamic Proteins," (K.A. Marx, L.A. Samuelson, M. Kamath, S. Sengupta, D. Kaplan, J. Kumar and S. Tripathy), Chapter 15 in Molecular and Biomolecular Electronics (R.R. Birge, ed.), Advances in Chemistry Series, 240, American Chemical Society Books, Washington, D.C. (1994).

"Molecular Recognition Between a Biotinylated Polythiophene Copolymer and Phycoerythrin Utilizing the Biotin-Streptavidin Interaction," (L.A. Samuelson, D.L. Kaplan, J.O. Lim, M. Kamath, K.A. Marx and S.K. Tripathy), Thin Solid Films   242, 50-55 (1994).

"Kinetics of DNA Binding to Electrically Conducting Polypyrrole Films,"  (D.S. Minehan, K.A. Marx and S.K. Tripathy), Macromolecules  27 , 777-783 (1994).

"Molecular Self-assembly on Optical Fibre-based Fluorescence Sensor,"  (M.S.R. Ayyagari, H. Gao, B. Bihari, K.G. Chiitbabu, J. Kumar, K.A. Marx, D.L. Kaplan and S.K. Tripathy), in Chemical, Biochemical, and Environmental Fibre Sensors V (R.A. Lieberman, Ed.) Proc. SPIE, 2068, 168-178 (1994).

"Synthesis of Two-Dimensional Electrooptic Polymer Networks Through Biocatalysis,"  (J.A. Akkara, F. Bruno, L.A. Samuelson, M. Ayyagari, S. Tripathy, K.A. Marx, V.T. John and D.L. Kaplan) Polymer Preprints,  34, Proceedings ACS Award Symposium,775-776 (1993).

"The Coupling of a Thiophene Copolymer to a Photoactive Antennae Protein Using Biotin/Streptavidin Complexation,"  (L.A. Samuelson, J.O. Lim, M. Kamath, K.A. Marx, S.K. Tripathy and D.L. Kaplan) in Polymer Preprints, 34, Proceedings, ACS Awards Symposium, , 759-760 (1993)

"Characteristics of the Large (dA).(dT) Homopolymer Tracts in D. discoideum Gene Flanking and Intron Sequences," (K.A. Marx, S. Hess and R.D. Blake), Journal of Biomolecular Structure and Dynamics, 11, 57-66 (1993).

"Biotinylated Poly(3-Hexylthiophene-co-3-Methanolthiophene); A Langmuir Monolayer Forming Copolymer," (M. Kamath, J.O. Lim, K.G. Chittibabu,, R. Sarma, L.A. Samuelson, J.A. Akkara,, D.L. Kaplan, , J. Kumar, K.A. Marx and S.K. Tripathy), Journal of Macromolecular Science A-Pure and Applied Chemistry   30 493-496 (1993).

"Photovoltaic Effects and Charge Transport Studies in Phycobiliproteins,"  (N.N. Beladekere, T. Ravindran, B. Bihari, S. Sengupta, K.A. Marx, J. Kumar, S.K. Tripathy,, B. Wiley, and D.L. Kaplan) in Biomolecular Materials (C. Viney, S.T. Case and J.H. Waite, eds.) MRS 292 193-198 (1993).

"Biotinylated Polythiophene Copolymer-A Novel Electroactive Biomaterial Utilizing the Biotin-Streptavidin Interaction"  (J.O.Lim, M. Kamath, K.A. Marx, S.K.Tripathy, D.L. Kaplan, and L.A. Samuelson,) in Biomolecular Materials (C. Viney, S.T. Case and J.H. Waite, eds.) Proc. MRS  292 141-146 (1993).

"The Enzymatic Mediated Polymerization of Phenol and Aniline Derivatives on a Langmuir Trough"  (F.F. Bruno, J.A. Akkara, L.A. Samuelson, D.L. Kaplan, K.A. Marx amd S. K. Tripathy), in Biomolecular Materials (C. Viney, S.T. Case and J.H. Waite, eds.) Proc. MRS  292 147-152 (1993).

"Comparison of Single and Double Stranded DNA Binding to Polypyrrole,"  (R. Pande, J.O. Lim, K.A. Marx, S.K. Tripathy, and D. L. Kaplan) in Biomolecular Materials (C. Viney, S.T. Case and J.H. Waite, eds.) Proc. MRS  292 135-140 (1993).

"High Affinity DNA-Microtubule Interactions:  Evidence for a Conserved DNA-MAP Interaction Involving Unusual High CsCl Density Repetitious DNA Families," (K. Marx and T. Denial) Molecular and Cellular Biochemistry  118, 39-48 (1992).

"Intelligent Materials Based on DNA Incorporated Within Electroactive Polymeric Thin Film Systems," (K.A. Marx, D.S. Minehan, J.O. Lim, M. Kamath, S. Tripathy and D.L. Kaplan), in Proceedings of First International Conference on Intelligent Materials, (T. Takagi, K. Takahashi, M. Aizawa and S. Miyata, Eds.) Technomic Publishing Co., Lancaster, PA. 446-454 (1992).

"Enzyme Catalyzed 2-D Polymerization of Phenol and Aniline Derivatives on a Langmuir-Blodgett Trough," (F. Bruno, J.A. Akkara, L.A. Samuelson, B.K. Mandal, D.L. Kaplan, K.A. Marx and S. Tripathy), in Proceedings of First International Conference on Intelligent Materials, ( T. Takagi, K. Takahashi, M. Aizawa and S. Miyata, eds.) Technomic Publishing Co., Lancaster, PA., 78-83 (1992).

"Demonstration of an LB Monolayer Cassette Strategy for Forming Ordered Arrays of Biological Molecules:  The Biotinylated B-DPPE-Lipid Monolayer-Streptavidin-Biotinylated Phycoerythrin Film,"  (L.A. Samuelson, K.A. Marx, J. Kumar, S.K. Tripathy, B. Wiley, S. Sengupta, M. Cazeca and D.L. Kaplan), in Proceedings of First International Conference on Intelligent Materials, (T. Takagi, K. Takahashi, M. Aizawa and S. Miyata, eds.) Technomic Publishing Co., Lancaster, PA., 65-73 (1992).

"High Affinity DNA-Microtubule Associated Protein Interaction," (K.A. Marx), Molecular and Cellular Biochemistry  113  55-61 (1992).

"The Affinity of DNA-Microtubule Protein Complexes and Their Disruption by Tubulin Binding Drugs," (C.M. Mello and K.A. Marx), J. Biomolecular Structure and Dynamics 9 791-805 (1992).

"Surface Specific Monolayer Attachment of a Photodynamic Protein Through Biotin-Streptavidin Complexation:  Demonstration of a Cassette Approach," (L.A. Samuelson, Y. Yang, K.A. Marx, J. Kumar, S.K. Tripathy and D.L. Kaplan), Biomimetics 1 (1) 51-61 (1992).

"Langmuir-Blodgett Films of Streptavidin-Conjugated Phycoerythrin Bound to Biotinylated Monolayers," (L. Samuelson, P. Miller, D. Galotti, K.A. Marx, J. Kumar, S. Tripathy and D. Kaplan), Thin Solid Films  210/211 796-798 (1992).

"The Monomolecular Organization of a Photodynamic Protein System Through Specific Surface Recognition of Streptavidin to Biotinylated LB Films,"  (L.A. Samuelson, P. Miller, D.M. Galotti, K.A. Marx, J. Kumar, S.K. Tripathy and D.L. Kaplan), Langmuir  8 604-608 (1992).

"Streptavidin-Phycoerythrin Conjugated Proteins Bound to Biotin on Langmuir-Blodgett Films of Biotinylated Lipid Monolayers," (L.A. Samuelson, D.L. Kaplan, K.A. Marx, P. Miller, D.M. Galotti, J. Kumar and S. Tripathy), in Materials Synthesis Based on Biological Processes (M. Alper, P.C. Rieke, R. Frankel, P.D. Calvert and D.A. Tirrell, eds.) MRS 218 159-164 (1991).

"DNA Binding to Conducting Polymer Films," (J.O. Lim, D.S. Minehan, M.Kamath, K.A. Marx and S.K. Tripathy), in Hierarchically Structured Materials MRS 255 195-200 (1992).

"Oriented Fluorescent Streptavidin Conjugated Phycoerythrin Protein on Biotinylated Lipid L-B Monolayer Films," (L.A. Samuelson, P. Miller, D.M. Galotti, K.A. Marx, J. Kumar, S. Tripathy and D.L. Kaplan), in Proteins Structure, Dynamics and Design (V. Renugopalakrishnan, P.R. Carey, I.C.P. Smith, S.-G. Huang and A.C. Storer, eds.) Escom Science Publishers BV, Leiden, Netherlands, 160-164 (1991).

"Enzyme Catalyzed 2-D Polymerization of Phenol Derivatives on a Langmuir-Blodgett Trough," (F. Bruno, J. Akkara, L.A. Samuelson, B. Mandal, D.L. Kaplan, K.A. Marx, and S. Tripathy), Polymer Preprints  32 232-233 (1991).

"Kinetics of DNA Binding to Polypyrrole," (D.S. Minehan, K.A. Marx and S.K. Tripathy), Proceedings of the ACS Division of PMSE  64 341-342 (1991).

"Surface Specific Recognition of Fluorescent Conjugated Streptavidin-Pycoerythrin Protein onto Biotin Lipid LB Monolayer Films," (L.A. Samuelson, P. Miller, D.M. Galotti, K.A. Marx, J. Kumar, S.K. Tripathy and D.L. Kaplan), Polymer Preprints  32 224-225 (1991).

"Solution Structure of Bacteriophage T4D and Icosahedral Capsid Geometry Visualized in Freeze-Fractured, Deep-Etched Replicas," (J. Aksiyote-Benbasat, G.C. Ruben and K.A. Marx), J. Biomolecular Structure and Dynamics  7 773-794 (1990).

."Electrooxidation of Imidazole to Form Soluble Electroactive Polymer," (D. Minehan, K.A. Marx and S. Tripathy), Polymer Preprints  31 (1) 390-391 (1990).

"A Micrococcal Nuclease Digestion Study of Spermidine-Condensed DNA," (K.A. Marx and T.C. Reynolds), Int. J. Biological Macromolecules  11 241-248 (1989).

"Reduced RNA Synthesis Levels in Isolated Nuclei Following Reaction with Aquopentaamineruthenium(II)," (K.A. Marx, C. Seery and P. Malloy), Molecular and Cellular Biochemistry  90 37-45 (1989).

"Binding of the Transition Metal Ion Pentaamineruthenium(II) to Nucleosomal Core and Internucleosomal DNA," (K.A. Marx, R. Kruger and M.J. Clarke), Molecular and Cellular Biochemistry  86 155-162 (1989).

"Direct Stereoscopic Visualization of Icosahedral Capsid Geometry in Bacteriophage T4 Freeze-Fractured, Deep-Etched Replicas," (G.C. Ruben, K.A. Marx and J. Benbasat), in Proceedings of the 46th Annual Meeting of the Electron Microscopy Society of America (G.W. Bailey, ed.) San Francisco Press, Inc., San Francisco, 316-317 (1988).

"Toroidal DNA Condensates; Aspects of Formation, Structure, Dynamics and Biological Implications," (K.A. Marx), in Structure and Dynamics of Biopolymers (C. Nicolini, ed.) NATO ASI Series E 133 Martinus Nijhoff Pub., 137-168 (1987).

"Biochemical Effects of Binding Aquopentaamineruthenium(II) to DNA and Oxidation to Aquopentaamineruthenium(III)n-DNA," (M.J. Clarke, B. Jansen, K.A. Marx and R. Kruger),  Inorganica Chimica Acta. 124 13-28 (1986).

"A Study of PhiX-174 DNA Torus and Lambda DNA Torus Tertiary Structure and the Implications for DNA Self-Assembly," (K.A. Marx and G.C. Ruben), J. Biomolecular Structure and Dynamics  4 23-39 (1986).

"Hydrated Macromolecular Assembly Structure Revealed by Freeze-Etch Stereo-Electron Microscopy," (K.A. Marx and G.C. Ruben), Biophysical Journal  49 53-55 (1986).

"Torus Circumference and Thickness Parameters From a Linear DNA Size Series Suggest How Toruses Self-Assemble," (G.C. Ruben and K.A. Marx), Proceedings of the 43rd Annual Meeting of the Electron Microscopy Society of America San Francisco Press, Inc., San Francisco, 522-523 (1985).

"DNA Tertiary Structure of Disk Shaped Toruses:  An in Vitro Viral DNA Model System," (K.A. Marx and G.C. Ruben), in The Molecular Basis of Cancer Progress in Clinical and Biological Research 172A Alan R. Liss, Inc., New York, 131-140 (1985).

"Chromosome Segregation, Kinetochores and DNA-Microtubule Interaction:  A Preferential Satellite DNA-MAP Interaction May Be Conserved in Evolution," (K.A. Marx and T. Denial), in The Molecular Basis of Cancer Progress in Clinical and Biological Research 172B Alan R. Liss, Inc., New York, 65-75 (1985).

"Stereoscopic Visualization of Spermidine-DNA Torus Structure Prepared by the Freeze-Fracture, Deep-Etch Technique," (G.C. Ruben, K.A. Marx and T.C. Reynolds), Proceedings of the 39th Annual Meeting of the Electron Microscopy Society of America (G.W. Bailey, ed.) Claitor's Publishing Co., Atlanta, 438-439 (1981).

"Parallax Measurements on Stereomicrographs of Hydrated Single Molecules, Their Accuracy and Precision at High Magnification," (G.C. Ruben and K.A. Marx), J. Electron Microscopy Technique  1 373-385 (1984).

"Freeze-Etch Toruses of Circular and Linear DNA Topological States Exhibit Characteristic Circumferencing Measurements," (G.C. Ruben and K.A. Marx), Proceedings of the 42nd Annual Meeting of the Electron Microscopy Society of America (G.W. Bailey, ed.) San Francisco Press, Inc., San Francisco, 212-213 (1984).

"Discrimination of Monomer From Multimer DNA Disk Shaped Toruses by Freeze-Etch TEM," (G.C. Ruben and K.A. Marx), Proceedings of the 42nd Annual Meeting of the Electron Microscopy Society of America (G.W. Bailey, ed.) San Francisco Press, Inc., San Francisco, 210-211 (1984).

"Real Fibre Diameters From Freeze-Etched Pt-C Replicated Fibre Images:  A DNA Study," (G.C. Ruben and K.A. Marx), Proceedings of the 42nd Annual Meeting of the Electron Microscopy Society of America (G.W. Bailey, ed.) San Francisco Press, Inc., San Francisco, 684-685 (1984).

"Studies of DNA Organization in Hydrated Spermidine-condensed DNA Toruses and Spermidine-DNA Fibres," (K.A. Marx and G.C. Ruben), J. Biomolecular Structure and Dynamics 1 1109-1132 (1984).

"High Affinity Microtubule Protein-Higher Organism DNA Complexes:  Many Fold Enrichment in Repetitive Mouse DNA Sequences Comprised of Satellite DNAs," (K.A. Marx, T. Denial and T. Keller), Biochim. Biophysica Acta. 783 283-292 (1984).

"Ion Competition and Micrococcal Nuclease Digestion Studies of Spermidine-Condensed DNA:  Evidence for Torus Organization by Circumferential DNA Wrapping," (K.A. Marx and T.C. Reynolds), Biochim. Biophysica Acta. 741 279-287 (1983).

"Deep-Etched, Replicated DNA Toruses Held on Edge in Ice Demonstrate a Complex 3-D Substructure by Extensive Tilting Along Shadowing Direction," (G.C. Ruben and K.A. Marx), Proceedings of the 41st Annual Meeting of the Electron Microscopy Society of America (G.W. Bailey, ed.) San Francisco Press, Inc., San Francisco, 714-715 (1983).

"Strategies for Error Reduction in High-Magnification Stereoscopic Measurements Based on Error Equation Calculations," (G.C. Ruben and K.A. Marx), Proceedings of the 41st Annual Meeting of the Electron Microscopy Society of America (G.W. Bailey, ed.) San Francisco Press, Inc., San Francisco, 704-705 (1983).

"Evidence for Hydrated Spermidine-Calf Thymus DNA Toruses Organized by Circumferential DNA Wrapping," (K.A. Marx and G.C. Ruben), Nucleic Acids Research  11 1839-1853 (1983).

"Spermidine-Condensed PhiX-174 DNA Cleavage by Micrococcal Nuclease:  Torus Cleavage Model and Evidence for Unidirectional Circumferential DNA Wrapping," (K.A. Marx and T.C. Reynolds), Proceedings of the National Academy of Science, USA  79 6484-6488 (1982).

"Freeze-Fracture Electron Microscopy of Spermidine-Single DNA Double Helices," (G.C. Ruben, K.A. Marx and T.C. Reynolds), Proceedings of the 39th Annual Meeting of the Electron Microscopy Society of America Claitor's Publishing Co., Atlanta, 440-441 (1981).

"Non-Satellite Repetitive Human DNA Families:  Sequence Properties and Evidence for Occurrence in Chimpanzee DNA," (K.A. Marx), Biochim. Biophysica Acta. 608 232-242 (1980).

"Primate Repetitive DNAs:  Evidence for New Satellite DNAs and Similarities in Non-Satellite Repetitive DNA Sequence Properties," (K.A. Marx, I.F. Purdom and K.W. Jones), Chromosoma 73 153-161 (1979).

"Differential Condensation of Mouse DNA Families in Chromatin:  Accessibility to Nuclease Probes," (K.A. Marx), Biochem. Biophys. Res. Commun. 78 777-783 (1977).

"Chromosomal Localizations by in Situ Hybridization of the Repetitious Human DNA Families and Evidence of Their Satellite DNA Equivalents," (K.A. Marx, J.R. Allen and J.E. Hearst), Chromosoma  59 23-42 (1976).

"Characterization of the Repetitious Human DNA Families," (K.A. Marx, J.R. Allen and J.E. Hearst), Biochim. Biophysica Acta. 425 139-147 (1976).

"The Two Component Kinetic Analysis Method:  Evidence for Two Reassociating Components in Mouse Satellite DNA and D. Ordii HS-beta Satellite DNA," (K.A. Marx and J.E. Hearst), J. Molecular Biology  98 355-368 (1975).

"The Magnitude of Intramolecular DNA Optical Absorbance with Variation in Na+ and GC Base Composition:  For Special Application to DNA Reassociation Studies," (K.A. Marx), Biopolymers 14 1103-1107 (1975).

"Characterization of the Rapidly Renaturing Sequences in the Main CsCl Density Bands of Drosophila, Mouse and the Human DNA," (J.E. Hearst, T.C. Cech, K.A. Marx, A. Rosenfeld and J.R. Allen), Cold Spring Harbor Symposium Quant. Biol. 38 329-339 (1973).

"Physical Characterization and Cytological Localization of the Families of Highly Redundant Human DNA," (K.A. Marx), Ph.D. Thesis, University of California at Berkeley, 204 pages (1973).

"Infrared Intensities of the Nitrite Ion in Solid Solution in Potassium Bromide," (W.D. Jones, K.A. Marx and S. Croft), J. Molecular Spectroscopy  30 498-505 (1969).

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